WormBase Tree Display for Gene: WBGene00053853

WBGene00053853 SMap: S_parent: Sequence: Crem_Contig1
  Identity: Version: 3
    Name: CGC_name: Cre-efl-3 From_analysis: Inferred_from_orthology
      Sequence_name: CRE01589
      Molecular_name: CRE01589
        CRE01589.1
        RP42870
      Other_name: cr01.sctg2.wum.629
      Public_name: Cre-efl-3
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:45 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE01589
                Other_name: cr01.sctg2.wum.629
        3 18 Jan 2011 10:21:04 WBPerson2970 Name_change: CGC_name: Cre-efl-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: efl
    RNASeq_FPKM: WBls:0000004 18.8267 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        19.4685 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        20.1102 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 13.6588 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        14.8149 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        14.9012 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        14.9875 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        20.2561 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        4.57671 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 3.47571 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        6.50384 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        6.9212 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        9.11462 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 2.33598 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        2.64549 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        2.68298 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        2.90215 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        2.95972 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        3.12133 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        3.2637 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        3.70885 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 (12)
      WBls:0000101 2.90215 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        5.57029 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00149127
      00149128
      00149129
      00149130
    Ortholog (27)
    Paralog: WBGene00057596 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00057741 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Is an ortholog of C. elegans efl-3. In C. elegans, efl-3 is involved in negative regulation of gene expression. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE01589
    Corresponding_transcript: CRE01589.1
    Other_sequence: Tcol_isotig22761
      Dviv_isotig35076
      EX557338.1
      ACC19820_1
      JI165989.1
      JI170192.1
  Experimental_info: Expr_pattern: Expr1103325
    Microarray_results: GPL14146_CRE01589_538-597_0.640_190_C
      GPL14146_CRE01589_872-931_0.906_11_B
      GPL14146_CRE01589_976-1035_0.901_15_A
  Method: Gene