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WormBase Tree Display for Gene: WBGene00054942

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Name Class

WBGene00054942SMapS_parentSequenceCrem_Contig7
IdentityVersion3
NameCGC_nameCre-gtf-2H3From_analysisInferred_from_orthology
Sequence_nameCRE25211
Molecular_nameCRE25211
CRE25211.1
RP37906
Other_namecr01.sctg4.wum.295
Public_nameCre-gtf-2H3
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:53WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25211
Other_namecr01.sctg4.wum.295
308 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCre-gtf-2H3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
RNASeq_FPKMWBls:000000431.2995From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
31.4636From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
31.6276From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:000002713.8083From_analysisRNASeq.remanei.WBls:0000027.control_mean
16.1605From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
16.2787From_analysisRNASeq.remanei.WBls:0000027.control_median
16.3969From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
19.6767From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
2.99902From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003814.9571From_analysisRNASeq.remanei.WBls:0000038.control_mean
18.8053From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
21.612From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
4.4539From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004119.8019From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
22.4784From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
22.9015From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
40.292From_analysisRNASeq.remanei.WBls:0000041.control_median
45.9946From_analysisRNASeq.remanei.WBls:0000041.control_mean
57.6826From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
76.0008From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
77.1025From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:0000063 (12)
WBls:000010119.7393From_analysisRNASeq.remanei.total_over_all_stages.control_median
25.5168From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00150286
00150287
00150288
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in nucleotide-excision repair and regulation of DNA-templated transcription. Predicted to be part of transcription factor TFIIH core complex. Is an ortholog of C. elegans gtf-2H3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25211
Corresponding_transcriptCRE25211.1
Other_sequence (18)
Experimental_infoExpr_patternExpr1114471
Microarray_resultsGPL14146_CRE25211_58-117_0.890_18_C
GPL14146_CRE25211_597-656_0.812_74_B
GPL14146_CRE25211_864-923_0.958_1_A
MethodGene