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WormBase Tree Display for Gene: WBGene00054946

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Name Class

WBGene00054946SMapS_parentSequenceCrem_Contig7
IdentityVersion3
NameCGC_nameCre-vps-29From_analysisInferred_from_orthology
Sequence_nameCRE25214
Molecular_nameCRE25214
CRE25214.1
RP45224
Other_namecr01.sctg4.wum.299
Public_nameCre-vps-29
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:45WBPerson2970Name_changeCGC_nameCre-vps-29
303 Jul 2008 11:44:53WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25214
Other_namecr01.sctg4.wum.299
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000488.1562From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
93.8905From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
99.6248From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:000002712.9755From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
46.8557From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
48.6206From_analysisRNASeq.remanei.WBls:0000027.control_median
50.0402From_analysisRNASeq.remanei.WBls:0000027.control_mean
50.3855From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
89.9442From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:000003824.37From_analysisRNASeq.remanei.WBls:0000038.control_mean
30.1142From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
34.9431From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
8.05275From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041105.639From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
107.543From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
111.445From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
29.4523From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
30.8277From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
33.5881From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
69.6135From_analysisRNASeq.remanei.WBls:0000041.control_median
69.7492From_analysisRNASeq.remanei.WBls:0000041.control_mean
WBls:0000063 (12)
WBls:000010134.2656From_analysisRNASeq.remanei.total_over_all_stages.control_median
45.8756From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00150290
00150291
Ortholog (27)
Structured_descriptionAutomated_descriptionPredicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of retromer complex. Is an ortholog of C. elegans vps-29.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25214
Corresponding_transcriptCRE25214.1
Other_sequence (49)
Experimental_infoExpr_patternExpr1098502
Microarray_resultsGPL14146_CRE25214_210-269_0.932_5_B
GPL14146_CRE25214_383-442_0.815_37_A
GPL14146_CRE25214_481-540_0.960_1_C
MethodGene