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WormBase Tree Display for Gene: WBGene00054950

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Name Class

WBGene00054950SMapS_parentSequenceCrem_Contig7
IdentityVersion3
NameCGC_nameCre-gtf-2H2CFrom_analysisInferred_from_orthology
Sequence_nameCRE25217
Molecular_nameCRE25217
CRE25217.1
RP19010
Other_namecr01.sctg4.wum.303
Public_nameCre-gtf-2H2C
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:53WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25217
Other_namecr01.sctg4.wum.303
308 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameCre-gtf-2H2C
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
RNASeq_FPKMWBls:000000438.6487From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
38.9917From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
39.3347From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002720.3479From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
22.4728From_analysisRNASeq.remanei.WBls:0000027.control_mean
24.5492From_analysisRNASeq.remanei.WBls:0000027.control_median
28.7504From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
34.4384From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
6.35446From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003822.052From_analysisRNASeq.remanei.WBls:0000038.control_mean
28.3674From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
28.8363From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
8.95221From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004124.5622From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
28.4917From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
29.4963From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
43.4892From_analysisRNASeq.remanei.WBls:0000041.control_median
46.4175From_analysisRNASeq.remanei.WBls:0000041.control_mean
57.4821From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
67.2343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
71.2385From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:0000063 (12)
WBls:000010129.1415From_analysisRNASeq.remanei.total_over_all_stages.control_median
30.4958From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00150292
00150293
00150294
00150295
00150296
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to enable zinc ion binding activity. Predicted to be involved in DNA-templated transcription and nucleotide-excision repair. Predicted to be part of transcription factor TFIIH core complex. Is an ortholog of C. elegans gtf-2H2C.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25217
Corresponding_transcriptCRE25217.1
Other_sequence (31)
Experimental_infoExpr_patternExpr1113075
Microarray_resultsGPL14146_CRE25217_121-180_0.866_20_A
GPL14146_CRE25217_293-352_0.824_44_C
GPL14146_CRE25217_410-469_0.890_9_B
MethodGene