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WormBase Tree Display for Gene: WBGene00055031

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Name Class

WBGene00055031SMapS_parentSequenceCrem_Contig7
IdentityVersion3
NameCGC_nameCre-vps-53From_analysisInferred_from_orthology
Sequence_nameCRE25262
Molecular_nameCRE25262
CRE25262.1
RP31303
Other_namecr01.sctg4.wum.381
Public_nameCre-vps-53
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:54WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25262
Other_namecr01.sctg4.wum.381
304 Jan 2010 16:38:10WBPerson2970Name_changeCGC_nameCre-vps-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000417.8036From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
18.4329From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
19.0623From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.199873From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
5.57146From_analysisRNASeq.remanei.WBls:0000027.control_mean
5.58689From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
6.14849From_analysisRNASeq.remanei.WBls:0000027.control_median
6.71009From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
9.789From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:00000381.48417From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
6.00794From_analysisRNASeq.remanei.WBls:0000038.control_mean
7.86748From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
8.67218From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:000004116.9865From_analysisRNASeq.remanei.WBls:0000041.control_median
17.5968From_analysisRNASeq.remanei.WBls:0000041.control_mean
27.2744From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
29.3641From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
29.723From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
6.12873From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
6.39207From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
6.69865From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063 (12)
WBls:00001016.90037From_analysisRNASeq.remanei.total_over_all_stages.control_median
9.43076From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00150379
00150380
Ortholog (34)
Structured_descriptionAutomated_descriptionPredicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of GARP complex. Is an ortholog of C. elegans vps-53. In C. elegans, vps-53 is involved in positive regulation of locomotion involved in locomotory behavior; regulation of brood size; and regulation of dense core granule transport.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25262
Corresponding_transcriptCRE25262.1
Other_sequence (50)
Experimental_infoExpr_patternExpr1114206
Microarray_resultsGPL14146_CRE25262_1648-1707_0.888_29_C
GPL14146_CRE25262_1928-1987_0.915_10_B
GPL14146_CRE25262_2099-2158_0.947_2_A
MethodGene