WormBase Tree Display for Gene: WBGene00058055

WBGene00058055 SMap: S_parent: Sequence: Crem_Contig3
  Identity: Version: 3
    Name: CGC_name: Cre-nphp-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE18553
      Molecular_name: CRE18553
        CRE18553.1
        RP35176
      Other_name: cr01.sctg10.wum.335
      Public_name: Cre-nphp-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:15 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE18553
                Other_name: cr01.sctg10.wum.335
        3 11 Apr 2012 13:56:30 WBPerson2970 Name_change: CGC_name: Cre-nphp-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nphp
    RNASeq_FPKM: WBls:0000004 0.077179 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        0.154359 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.626011 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        2.18407 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        2.22515 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        2.26623 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        2.54638 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        5.10921 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 0.063389 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        0.885344 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        0.962163 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        1.63048 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 0.123954 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        0.151347 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.195015 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.25697 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        0.270224 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        0.318926 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        0.374179 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        0.457925 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 0.108427 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.316435 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        0.767833 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
            RNASeq.remanei.WBls:0000063.control_median
      WBls:0000101 0.152853 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        0.603905 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (23)
    Paralog (20)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Domain of unknown function DUF3447; Ankyrin repeats (3 copies); Ankyrin repeat; and Ankyrin repeat-containing domain superfamily. Is an ortholog of C. elegans nphp-2. In C. elegans, nphp-2 is involved in protein localization to ciliary inversin compartment. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE18553
    Corresponding_transcript: CRE18553.1
    Other_sequence: JI468614.1
      JI479380.1
      Acan_isotig04188
      JI179367.1
      JI467427.1
      JI166629.1
      JI166462.1
  Experimental_info: Expr_pattern: Expr1109746
    Microarray_results: GPL14146_CRE18553_2261-2320_0.871_32_C
      GPL14146_CRE18553_2356-2415_0.804_86_B
      GPL14146_CRE18553_2473-2532_0.898_15_A
  Method: Gene