WormBase Tree Display for Gene: WBGene00058795

WBGene00058795 SMap: S_parent: Sequence: Crem_Contig43
  Identity: Version: 3
    Name: CGC_name: Cre-cdd-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE19267
      Molecular_name: CRE19267
        CRE19267.1
        RP02376
      Other_name: cr01.sctg12.wum.293
      Public_name: Cre-cdd-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:49 WBPerson2970 Name_change: CGC_name: Cre-cdd-1
        3 03 Jul 2008 11:45:20 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE19267
                Other_name: cr01.sctg12.wum.293
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdd
    RNASeq_FPKM: WBls:0000004 0.241174 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        0.482348 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 17.186 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        25.2597 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        25.3081 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        33.4302 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        3.91886 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        46.5037 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 27.5468 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        28.3092 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        5.10191 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        52.279 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 14.5006 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        15.0199 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        16.8413 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        17.0172 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        17.3046 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        17.7678 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        18.3392 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        19.6342 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 22.8333 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        29.6502 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00154256
      00154257
      00154258
      00154259
    Ortholog (28)
    Paralog: WBGene00056997 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00071952 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Is an ortholog of C. elegans cdd-1. In C. elegans, cdd-1 is involved in RNA modification; deoxycytidine catabolic process; and uridine biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE19267
    Corresponding_transcript: CRE19267.1
    Other_sequence: Tcol_isotig07970
      Tcol_isotig07971
      Tcir_isotig28272
      CBC05752_1
      GP02112
  Experimental_info: Expr_pattern: Expr1096292
    Microarray_results: GPL14146_CRE19267_15-74_0.946_5_C
      GPL14146_CRE19267_371-430_0.957_1_B
      GPL14146_CRE19267_89-148_0.911_14_A
  Method: Gene