WormBase Tree Display for Gene: WBGene00059542

WBGene00059542 SMap: S_parent: Sequence: Crem_Contig19
  Identity: Version: 3
    Name: CGC_name: Cre-gtf-2H1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE10057
      Molecular_name: CRE10057
        CRE10057.1
        RP16549
      Other_name: cr01.sctg14.wum.370
      Public_name: Cre-gtf-2H1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:25 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE10057
                Other_name: cr01.sctg14.wum.370
        3 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Cre-gtf-2H1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtf
    RNASeq_FPKM: WBls:0000004 43.9244 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        44.5437 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        45.1629 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 0.752509 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        11.6445 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        13.7283 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        14.125 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        14.5218 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        17.5752 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 1.30624 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        13.2836 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        18.1712 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        20.3733 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 14.1525 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        17.6919 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        18.1976 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        33.0382 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        35.5793 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        47.8787 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        54.4091 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        61.146 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 14.4487 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        19.459 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00155078
      00155079
      00155080
    Ortholog (25)
    Paralog: WBGene00072541 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00069051 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to be involved in DNA-templated transcription and nucleotide-excision repair. Predicted to be part of transcription factor TFIIH core complex. Is an ortholog of C. elegans gtf-2H1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE10057
    Corresponding_transcript: CRE10057.1
    Other_sequence (42)
  Experimental_info: Expr_pattern: Expr1105524
    Microarray_results: GPL14146_CRE10057_1399-1458_0.909_13_C
      GPL14146_CRE10057_239-298_0.666_164_B
      GPL14146_CRE10057_288-347_0.606_206_A
  Method: Gene