WormBase Tree Display for Gene: WBGene00059848

WBGene00059848 SMap: S_parent: Sequence: Crem_Contig9
  Identity: Version: 3
    Name: CGC_name: Cre-sptf-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE29852
      Molecular_name: CRE29852
        CRE29852.1
        RP14209
      Other_name: cr01.sctg16.wum.22
      Public_name: Cre-sptf-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:26 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE29852
                Other_name: cr01.sctg16.wum.22
        3 04 Jul 2008 11:06:40 WBPerson4055 Name_change: CGC_name: Cre-sptf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sptf
    RNASeq_FPKM: WBls:0000004 10.2737 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        10.2887 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        10.3037 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (45)
      WBls:0000027 0.219947 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        0.879789 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
            RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
            RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
            RNASeq.remanei.WBls:0000027.control_median
      WBls:0000038 1.2077 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.84225 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        3.14797 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        4.17107 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 0.874102 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        1.29851 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        1.56195 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        1.76744 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        1.77842 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        1.97294 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        2.39219 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        2.57085 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 0.542271 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.806863 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        1.02371 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        1.4683 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
            RNASeq.remanei.WBls:0000063.control_median
        2.12384 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
      WBls:0000101 0.95175 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        1.7722 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (17)
    Paralog: WBGene00053954 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054125 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00056040 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00063537 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00070172 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: Zinc finger C2H2 superfamily. Is an ortholog of C. elegans sptf-1. In C. elegans, sptf-1 is involved in neuron differentiation and positive regulation of gene expression. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE29852
    Corresponding_transcript: CRE29852.1
    Other_sequence: Oden_isotig21866
      Hbac_isotig03628
      Dviv_isotig17702
      JI174120.1
      OOC03445_1
      HBC12355_1
      Acan_isotig12867
      EX913194.1
  Experimental_info: Expr_pattern: Expr1098649
    Microarray_results: GPL14146_CRE29852_122-181_0.908_7_B
      GPL14146_CRE29852_223-282_0.859_22_A
      GPL14146_CRE29852_90-149_0.883_13_C
  Method: Gene