WormBase Tree Display for Gene: WBGene00060430

WBGene00060430 SMap: S_parent: Sequence: Crem_Contig11
  Identity: Version: 3
    Name: CGC_name: Cre-xnp-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE03874
      Molecular_name: CRE03874
        CRE03874.1
        RP43898
      Other_name: cr01.sctg18.wum.73
      Public_name: Cre-xnp-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:40 WBPerson2970 Name_change: CGC_name: Cre-xnp-1
        3 03 Jul 2008 11:45:32 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE03874
                Other_name: cr01.sctg18.wum.73
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: xnp
    RNASeq_FPKM: WBls:0000004 92.9511 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        94.4704 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        95.9897 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 10.0461 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        10.4526 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        10.7798 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        10.8005 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        11.5496 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        11.5766 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        12.2912 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        12.5342 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        12.5914 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        13.091 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        13.139 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        13.1564 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        13.1771 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        13.875 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        14.0563 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        14.2516 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
        14.4112 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        14.7328 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        14.8103 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        14.9215 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        14.9754 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        16.3938 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        16.4649 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        17.6173 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        17.6253 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        18.1576 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        18.2191 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
        18.5689 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        19.3274 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        20.1664 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        20.2952 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        20.476 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
        21.1626 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        21.4974 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        22.6128 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        23.6214 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        24.6499 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        25.2051 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        25.5156 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        25.7925 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
        28.2285 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        28.9794 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        29.0224 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        29.124 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        30.4376 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        34.7657 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        34.983 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        36.9831 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        7.71232 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        8.42473 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        8.68148 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        8.98649 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        9.38155 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
      WBls:0000027 22.1521 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        23.9278 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        26.9928 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        30.0579 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        30.6729 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        3.9496 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 21.8133 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        29.3695 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        29.8238 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
        6.2465 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 17.7769 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        18.7182 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        19.8678 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        32.3985 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        32.5164 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        45.1651 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        46.1862 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        46.6768 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 13.9593 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        15.2118 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        15.5021 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        15.547 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        16.4672 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        16.5616 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        16.6561 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        16.7501 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        16.7555 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        16.9699 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        17.9974 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
        8.70634 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
      WBls:0000101 17.8871 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        26.6308 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00155850
      00155851
    Ortholog: WBGene00006961 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00040891 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00098088 Pristionchus pacificus From_analysis: OMA
      WBGene00162297 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133607 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153396 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00221963 Brugia malayi From_analysis: WormBase-Compara
      WBGene00236833 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g9339 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7544 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17979 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g20707 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14793 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6659 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g501 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2983 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8082 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17235 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g21109 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00471.g11232 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-xnp-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8508 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00461.g11672 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14742 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11779 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13719 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g14182 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g9302 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10308200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g753 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00258413 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290671 Trichuris muris From_analysis: WormBase-Compara
      WBGene00294471 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00063852 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00051852 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00053636 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00054679 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055361 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055471 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055754 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00058869 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00059146 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00059796 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00059935 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00060432 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00061330 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00062536 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00063077 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00066147 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00066637 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00066639 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00067096 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00068214 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00070761 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00073538 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00074342 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00074419 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00075291 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00076599 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00079199 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00079961 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00082338 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00082885 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00082886 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00084479 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00085182 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00075984 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity and ATP-dependent chromatin remodeler activity. Is an ortholog of C. elegans xnp-1. In C. elegans, xnp-1 is involved in several processes, including embryo development; gonad development; and vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE03874
    Corresponding_transcript: CRE03874.1
    Other_sequence: ACC39818_1
      RSC02275_1
      SS00443
      GRC01501_1
      Dviv_isotig23702
      FC539809.1
      FC541484.1
      SSC05411_1
      Acan_isotig08620
      FC542066.1
      CRC06708_1
      ACC08344_1
      FM207837.1
      FC547180.1
      CRC10231_1
      Oden_isotig17097
      Oden_isotig17098
      GR12547
      FK806470.1
      MP01735
      JI164369.1
      Acan_isotig16613
      RS06987
      CN477472.1
      Tcol_isotig09992
      Tcol_isotig09993
      EX553160.1
      Acan_isotig19229
      Tcol_isotig13172
      JI164354.1
      EX558806.1
      FC542378.1
      Dviv_isotig28542
      HCC03124_1
      Dviv_isotig14891
      HC00726
      CBC03743_1
      Dviv_isotig14892
      MPC01324_1
  Experimental_info: Expr_pattern: Expr1092243
    Microarray_results: GPL14146_CRE03874_3066-3125_0.855_63_C
      GPL14146_CRE03874_3111-3170_0.883_42_A
      GPL14146_CRE03874_3343-3402_0.908_16_B
  Method: Gene