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WormBase Tree Display for Gene: WBGene00061930

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Name Class

WBGene00061930SMapS_parentSequenceCrem_Contig223
IdentityVersion3
NameCGC_nameCre-trf-1From_analysisInferred_from_orthology
Sequence_nameCRE14980
Molecular_nameCRE14980
CRE14980.1
RP03508
Other_namecr01.sctg27.wum.111
Public_nameCre-trf-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:46WBPerson2970Name_changeCGC_nameCre-trf-1
303 Jul 2008 11:45:41WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE14980
Other_namecr01.sctg27.wum.111
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtrf
RNASeq_FPKMWBls:00000040.103657From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
0.207315From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:00000240.059901From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
0.081779From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
0.092031From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
0.096792From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
0.12424From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
0.126131From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
0.137053From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
0.16274From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
0.186862From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
0From_analysis (44)
WBls:00000270From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
RNASeq.remanei.WBls:0000027.control_mean
RNASeq.remanei.WBls:0000027.control_median
WBls:00000380.09267From_analysisRNASeq.remanei.WBls:0000038.control_mean
0.278009From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
WBls:00000410.082576From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
0.100826From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
1.71888From_analysisRNASeq.remanei.WBls:0000041.control_median
1.81598From_analysisRNASeq.remanei.WBls:0000041.control_mean
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
3.33694From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
3.60713From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
3.76844From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:00000631.31656From_analysisRNASeq.remanei.WBls:0000063.control_median
1.96806From_analysisRNASeq.remanei.WBls:0000063.control_mean
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
2.63312From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
3.14657From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
3.45626From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
4.62367From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
5.82098From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
WBls:00001011.19469From_analysisRNASeq.remanei.total_over_all_stages.control_mean
0From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00157329
00157330
00157331
Ortholog (33)
ParalogWBGene00072462Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable zinc ion binding activity. Predicted to be involved in regulation of apoptotic process and signal transduction. Is an ortholog of C. elegans trf-1. In C. elegans, trf-1 is involved in defense response to Gram-negative bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE14980
Corresponding_transcriptCRE14980.1
Other_sequenceSRC08164_1
FC813589.1
Dviv_isotig25017
Experimental_infoExpr_patternExpr1099685
Microarray_resultsGPL14146_CRE14980_1162-1221_0.630_112_B
GPL14146_CRE14980_415-474_0.892_6_C
GPL14146_CRE14980_993-1052_0.834_29_A
MethodGene