WormBase Tree Display for Gene: WBGene00064270

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WBGene00064270	SMap	S_parent	Sequence	Crem_Contig9
	Identity	Version	3
		Name	CGC_name	Cre-prg-1.3	From_analysis	Inferred_from_orthology
			Sequence_name	CRE29675
			Molecular_name	CRE29675
				CRE29675.1
				RP26932
			Other_name	cr01.sctg47.wum.36
			Public_name	Cre-prg-1.3
		Species	Caenorhabditis remanei
		History	Version_change	1	09 Nov 2007 10:19:27	WBPerson1847	Event	Created
				2	03 Jul 2008 11:45:57	WBPerson4055	Event	Imported	from NGASP
							Name_change	Sequence_name	CRE29675
								Other_name	cr01.sctg47.wum.36
				3	20 Mar 2018 10:26:12	WBPerson4025	Name_change	CGC_name	Cre-prg-1.3
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	prg
		RNASeq_FPKM	WBls:0000004	0.36621	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
				0.488348	From_analysis	RNASeq.remanei.WBls:0000004.control_mean
						RNASeq.remanei.WBls:0000004.control_median
				0.610485	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
			WBls:0000024	0.037751	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
				0.039651	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
				0.040311	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
				0.05895	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
				0.06629	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
				0.072722	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
				0.075819	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
				0.080428	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
				0.095423	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
				0.114928	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
				0.117074	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
				0.124664	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
				0.128574	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
				0.142603	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
				0.154483	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
				0.174152	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
				0.175474	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
				0.248582	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
				0.263783	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
				0.272219	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
				0.292279	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
				0.413419	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
				0.506659	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
				0.781365	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
				0	From_analysis	RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
						RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
						RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
						RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
						RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
			WBls:0000027	0	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
						RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
						RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
						RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
						RNASeq.remanei.WBls:0000027.control_mean
						RNASeq.remanei.WBls:0000027.control_median
			WBls:0000038	10.7909	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
						RNASeq.remanei.WBls:0000038.control_median
				12.4676	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
				4.63824	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
				9.29891	From_analysis	RNASeq.remanei.WBls:0000038.control_mean
			WBls:0000041	0.424026	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
				0.622336	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
				0.67413	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
				28.2121	From_analysis	RNASeq.remanei.WBls:0000041.control_median
				29.4563	From_analysis	RNASeq.remanei.WBls:0000041.control_mean
				55.75	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
				58.3191	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
				60.9484	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
			WBls:0000063	1.02855	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
				1.04773	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
				1.09781	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
				1.10484	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
				2.18714	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
				22.5284	From_analysis	RNASeq.remanei.WBls:0000063.control_median
				24.8949	From_analysis	RNASeq.remanei.WBls:0000063.control_mean
				42.8696	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
				45.5036	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
				46.3123	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
				47.574	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
				60.2234	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
			WBls:0000101	1.10133	From_analysis	RNASeq.remanei.total_over_all_stages.control_median
				17.4831	From_analysis	RNASeq.remanei.total_over_all_stages.control_mean
		GO_annotation	00159573
			00159574
		Ortholog	WBGene00004178	Caenorhabditis elegans	From_analysis	OMA
						TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00004179	Caenorhabditis elegans	From_analysis	OMA
						TreeFam
			WBGene00032975	Caenorhabditis briggsae	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00124776	Caenorhabditis japonica	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00113193	Pristionchus pacificus	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00154222	Caenorhabditis brenneri	From_analysis	OMA
						TreeFam
						WormBase-Compara
			WBGene00161465	Caenorhabditis brenneri	From_analysis	TreeFam
						WormBase-Compara
			CBOVI.g10186	Caenorhabditis bovis	From_analysis	WormBase-Compara
			CSP21.g15904	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP26.g4737	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP26.g9290	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP28.g8606	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g10815	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g17151	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP31.g4678	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g11549	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g22073	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g1652	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP40.g5922	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			CSP40.g6792	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00048.g2550	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_08871.g21750	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_09051.g21854	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_15928.g25210	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_16198.g25298	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_17075.g25583	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_28602.g27664	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cnig_chr_I.g1824	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold591.g5111	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp11.Scaffold630.g21009	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_00873.g16331	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_07012	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_002680	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g14787	Oscheius tipulae	From_analysis	WormBase-Compara
			Sp34_10098600	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			chrIV_pilon.g10637	Caenorhabditis elegans	From_analysis	WormBase-Compara
			chrI_pilon.g1418	Caenorhabditis elegans	From_analysis	WormBase-Compara
		Paralog	WBGene00066619	Caenorhabditis remanei	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00070957	Caenorhabditis remanei	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00082212	Caenorhabditis remanei	From_analysis	WormBase-Compara
						GeneACeDB-Compara
			WBGene00071850	Caenorhabditis remanei	From_analysis	GeneACeDB-Compara
			WBGene00084046	Caenorhabditis remanei	From_analysis	GeneACeDB-Compara
		Structured_description	Automated_description	Predicted to enable RNA binding activity. Is an ortholog of C. elegans prg-1. In C. elegans, prg-1 is involved in 21U-RNA metabolic process; gamete generation; and positive regulation of mitotic nuclear division.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	CRE29675
		Corresponding_transcript	CRE29675.1
		Other_sequence	MJ04648
			Dviv_isotig23271
			FG978813.1
			EX554611.1
			MJC03794_1
			PP01119
			PPC19842_1
			HBC11469_1
			Acan_isotig14204
			Hbac_isotig05203
			CBC04138_1
			Tcol_isotig16804
			PPC01069_1
	Experimental_info	Expr_pattern	Expr1103806
		Microarray_results	GPL14146_CRE29675_1980-2039_0.916_10_C
			GPL14146_CRE29675_2071-2130_0.834_86_B
			GPL14146_CRE29675_2554-2613_0.656_377_A
	Method	Gene