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WormBase Tree Display for Gene: WBGene00064898

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Name Class

WBGene00064898SMapS_parentSequenceCrem_Contig47
IdentityVersion3
NameCGC_nameCre-gtf-2H5From_analysisInferred_from_orthology
Sequence_nameCRE25692
Molecular_nameCRE25692
CRE25692.1
RP25504
Other_namecr01.sctg53.wum.75
Public_nameCre-gtf-2H5
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
203 Jul 2008 11:46:01WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25692
Other_namecr01.sctg53.wum.75
308 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCre-gtf-2H5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
RNASeq_FPKMWBls:0000004101.797From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
104.114From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
106.431From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:0000027139.061From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
37.8853From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
57.8991From_analysisRNASeq.remanei.WBls:0000027.control_median
63.7148From_analysisRNASeq.remanei.WBls:0000027.control_mean
77.9128From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:0000038118.335From_analysisRNASeq.remanei.WBls:0000038.control_mean
129.012From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
136.481From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
89.5111From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041142.496From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
145.481From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
153.484From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
176.094From_analysisRNASeq.remanei.WBls:0000041.control_median
189.191From_analysisRNASeq.remanei.WBls:0000041.control_mean
198.703From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
219.01From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
275.975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:0000063 (12)
WBls:0000101111.761From_analysisRNASeq.remanei.total_over_all_stages.control_median
130.932From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00160164
00160165
00160166
Ortholog (20)
Structured_descriptionAutomated_descriptionPredicted to be involved in nucleotide-excision repair and transcription initiation at RNA polymerase II promoter. Predicted to be part of transcription factor TFIIH core complex. Is an ortholog of C. elegans gtf-2H5. In C. elegans, gtf-2H5 is involved in nucleotide-excision repair and transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25692
Corresponding_transcriptCRE25692.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1110499
Microarray_resultsGPL14146_CRE25692_144-203_0.947_2_C
GPL14146_CRE25692_147-206_0.972_1_A
GPL14146_CRE25692_49-108_0.819_10_B
MethodGene