Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00065040

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00065040SMapS_parentSequenceCrem_Contig60
IdentityVersion3
NameCGC_nameCre-vps-54From_analysisInferred_from_orthology
Sequence_nameCRE12899
Molecular_nameCRE12899
CRE12899.1
RP41817
Other_namecr01.sctg56.wum.30
Public_nameCre-vps-54
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-vps-54
303 Jul 2008 11:46:02WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE12899
Other_namecr01.sctg56.wum.30
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:00000046.02428From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
6.72436From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
7.42443From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:000002711.6668From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
2.07909From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
6.35248From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
7.19351From_analysisRNASeq.remanei.WBls:0000027.control_mean
7.51407From_analysisRNASeq.remanei.WBls:0000027.control_median
8.67566From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:000003810.3911From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
13.0874From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
4.47364From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
9.31738From_analysisRNASeq.remanei.WBls:0000038.control_mean
WBls:000004110.0277From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
19.7928From_analysisRNASeq.remanei.WBls:0000041.control_median
21.5368From_analysisRNASeq.remanei.WBls:0000041.control_mean
29.5579From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
33.614From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
38.6119From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
8.4143From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
8.99473From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (12)
WBls:000010110.2144From_analysisRNASeq.remanei.total_over_all_stages.control_mean
7.66786From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00160307
00160308
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of GARP complex. Is an ortholog of C. elegans vps-54.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE12899
Corresponding_transcriptCRE12899.1
Other_sequence (21)
Experimental_infoExpr_patternExpr1102022
Microarray_resultsGPL14146_CRE12899_2068-2127_0.848_64_C
GPL14146_CRE12899_2208-2267_0.931_9_B
GPL14146_CRE12899_2332-2391_0.954_1_A
MethodGene