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WormBase Tree Display for Gene: WBGene00085828

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Name Class

WBGene00085828SMapS_parentSequenceCrem_Contig82
IdentityVersion2
NameCGC_nameCre-tspo-1From_analysisInferred_from_orthology
Sequence_nameCRE09648
Molecular_nameCRE09648
CRE09648.1
RP39039
Public_nameCre-tspo-1
SpeciesCaenorhabditis remanei
HistoryVersion_change103 Jul 2008 11:46:54WBPerson4055EventCreated
228 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCre-tspo-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtspo
RNASeq_FPKMWBls:0000004199.679From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
211.305From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
222.931From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024100.695From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
102.364From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
104.04From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
106.782From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
107.079From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
107.493From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
111.05From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
113.468From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
114.329From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
117.291From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
118.14From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
119.478From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
120.157From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
120.474From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
121.431From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
122.14From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
123.257From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
123.86From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
125.87From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
126.921From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
127.759From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
128.717From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
133.443From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
136.005From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
139.177From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
139.885From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
150.682From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
34.0726From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
64.7489From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
68.6088From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
70.266From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
71.4035From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
71.9943From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
74.1513From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
74.5855From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
77.0009From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
77.6458From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
78.3391From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
79.6688From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
80.0301From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
80.7513From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
81.0573From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
81.6974From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
82.8802From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
86.9167From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
88.1903From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
89.6034From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
91.2391From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
92.8779From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
93.6477From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
95.3993From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
96.9908From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
97.5445From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
WBls:000002756.685From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
66.1526From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
72.0929From_analysisRNASeq.remanei.WBls:0000027.control_mean
74.2113From_analysisRNASeq.remanei.WBls:0000027.control_median
82.2699From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
83.2643From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:0000038145.528From_analysisRNASeq.remanei.WBls:0000038.control_mean
163.179From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
201.518From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
71.8861From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041113.223From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
124.169From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
125.203From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
150.029From_analysisRNASeq.remanei.WBls:0000041.control_median
154.162From_analysisRNASeq.remanei.WBls:0000041.control_mean
174.854From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
176.795From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
210.728From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063101.326From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
118.043From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
127.441From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
129.844From_analysisRNASeq.remanei.WBls:0000063.control_median
131.348From_analysisRNASeq.remanei.WBls:0000063.control_mean
132.246From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
145.041From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
150.347From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
150.944From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
200.13From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
93.3693From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
94.5881From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
WBls:0000101126.322From_analysisRNASeq.remanei.total_over_all_stages.control_median
130.231From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00172362
OrthologWBGene00042588Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00077771Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00139553Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155085Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00144475Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00150612Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00112622Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00209561Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00238490Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00238493Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g9757Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1160Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19113Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20989Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4818Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9794Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8294Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11687Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5142Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cni-C41G7.9Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14898Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00089.g3928Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_000461Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06363Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11534Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10070710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1828Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00294506Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Is an ortholog of C. elegans tspo-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE09648
Corresponding_transcriptCRE09648.1
Other_sequenceGO240382.1
OOC00960_1
MIC07020_1
AYC03881_1
BU087386.1
GP01801
BMC02787_1
NAC00446_1
EX009666.1
Tcir_isotig07151
WBC01768_1
EX013637.1
MCC02117_1
PPC05789_1
HGC01119_2
ASC21773_1
HBC18371_1
ES411535.1
HCC02347_1
FE910371.1
MJ00671
JI172709.1
MHC02788_1
HG03462
PPC17428_1
TDC00381_1
JO467737.1
Oden_isotig18030
GW412368.1
ACC00698_1
FE919849.1
BXC03464_1
SSC01796_1
HC07790
AE00169
HG00093
AE02216
Acan_isotig11177
CBC03671_1
NBC09728_1
PSC01577_1
Dviv_isotig03931
CR12373
MC00873
CK850309.1
GW408498.1
EX013979.1
AS02245
HGC01119_1
OF00202
MJC00003_1
GW406519.1
CR04149
MI02537
GW408846.1
DIC00653_1
Name_isotig06946
HGC11014_1
MH02344
EX012451.1
Dviv_isotig03928
PPC05344_1
GW412155.1
NB09722
BG467691.1
HGC08964_1
DI01103
HG02003
BUC02039_1
SS01421
Tcol_isotig12652
CJC09035_1
CB043007.1
ES739528.1
Hbac_isotig03495
HC03977
HBC04531_1
EX013248.1
BU666848.1
GPC00055_1
BU088610.1
EX008815.1
Name_isotig02677
CRC06944_1
GE639040.1
Experimental_infoExpr_patternExpr1112530
Microarray_resultsGPL14146_CRE09648_491-550_0.792_38_A
MethodGene