WormBase Tree Display for Gene: WBGene00089762
expand all nodes | collapse all nodes | view schema
| WBGene00089762 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | Sequence_name | PPA00208 | |||||||
| Molecular_name | PPA00208 | ||||||||
| PPA00208.1 | |||||||||
| PP62395 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000057338 | ||||||||
| GENEPREDICTION_SNAP300000057339 | |||||||||
| UMM-S57-30.34 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA00208 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-elt-3 | ||||
| 3 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00089763 | ||||
| 4 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| Acquires_merge | WBGene00089763 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 2.06054 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.686847 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00173117 | ||||||||
| 00173118 | |||||||||
| 00173119 | |||||||||
| Ortholog (46) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Automated_description | Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans end-1; grd-12; and grd-9. In C. elegans, end-1 is involved in endodermal cell fate specification and positive regulation of transcription by RNA polymerase II. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA00208 | |||||||
| Corresponding_transcript | PPA00208.1 | ||||||||
| Other_sequence | Tcir_isotig14053 | ||||||||
| Acan_isotig11496 | |||||||||
| Tcir_isotig06802 | |||||||||
| EV851227.1 | |||||||||
| Oden_isotig23136 | |||||||||
| Tcol_isotig13564 | |||||||||
| DVC01349_1 | |||||||||
| Dviv_isotig24245 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_55246 | |||||||
| GPL14372_Probes_55247 | |||||||||
| GPL14372_Probes_55248 | |||||||||
| GPL14372_Probes_55249 | |||||||||
| Expression_cluster | WBPaper00041606:PP_X.nematophila_regulated | ||||||||
| Remark | [180319 gw3] The CGC name Ppa-elt-3 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00095442 | Curator_confirmed | WBPerson4025 | ||||||
| Method | Gene |
