WormBase Tree Display for Gene: WBGene00090879
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| WBGene00090879 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-lpr-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA01325 | ||||||||
| Molecular_name | PPA01325 | ||||||||
| PPA01325.1 | |||||||||
| PP72230 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000057764 | ||||||||
| UMM-S2847-13.10 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-lpr-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00202518 | ||||
| 3 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-lpr-2 | ||||
| 4 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-lpr-2 | ||||
| 6 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-lpr-2 | ||||
| Acquires_merge | WBGene00202518 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lpr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 11.5719 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 7.11099 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 9.76107 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00173683 | ||||||||
| 00173684 | |||||||||
| 00173685 | |||||||||
| 00173686 | |||||||||
| Ortholog (24) | |||||||||
| Structured_description | Automated_description | Predicted to enable hydrolase activity; retinoid binding activity; and retinol transmembrane transporter activity. Predicted to be involved in lipid catabolic process. Is an ortholog of C. elegans lpr-2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA01325 | |||||||
| Corresponding_transcript | PPA01325.1 | ||||||||
| Other_sequence | FC820597.1 | ||||||||
| Acan_isotig01730 | |||||||||
| FC820342.1 | |||||||||
| Oden_isotig22111 | |||||||||
| SRC06692_1 | |||||||||
| TSC06643_1 | |||||||||
| ES569219.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_24554 | |||||||
| GPL14372_Probes_77763 | |||||||||
| GPL14372_Probes_77764 | |||||||||
| GPL14372_Probes_77765 | |||||||||
| GPL14372_Probes_77766 | |||||||||
| GPL14372_Probes_77767 | |||||||||
| GPL14372_Probes_77768 | |||||||||
| GPL14372_Probes_77770 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-lpr-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lpr-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
