WormBase Tree Display for Gene: WBGene00093010
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WBGene00093010 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Identity | Version | 9 | ||||
Name | CGC_name | Ppa-apa-2.1 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA03456 | |||||
Molecular_name | PPA03456 | |||||
PPA03456.1 | ||||||
PP62857 | ||||||
Other_name | GENEPREDICTION_SNAP300000059799 | |||||
GENEPREDICTION_SNAP300000061203 | ||||||
UMA-S2845-10.0 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-apa-2.1 | |||||
Species | Pristionchus pacificus | |||||
History (2) | ||||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | apa | |||||
RNASeq_FPKM | WBls:0000032 | 2.56183 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 1.86242 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
2.56183 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
3.02542 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00174852 | |||||
00174853 | ||||||
00174854 | ||||||
00174855 | ||||||
00174856 | ||||||
00174857 | ||||||
00174858 | ||||||
00174859 | ||||||
Ortholog (42) | ||||||
Paralog | WBGene00094535 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
WBGene00111430 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
WBGene00281351 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Predicted to enable clathrin adaptor activity. Predicted to be involved in clathrin-dependent endocytosis and intracellular protein transport. Predicted to be part of AP-2 adaptor complex. Is an ortholog of C. elegans apa-2. In C. elegans, apa-2 is involved in clathrin-dependent endocytosis; embryo development; and protein localization. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA03456 | ||||
Corresponding_transcript | PPA03456.1 | |||||
Other_sequence (63) | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_74928 | ||||
GPL14372_Probes_74929 | ||||||
GPL14372_Probes_74930 | ||||||
Remark | [190208 pad] The CGC name Ppa-apa-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[210528 pad] The CGC name Ppa-apa-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Removed duplicate Other_name Ppa-apa-2.1 | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |