WormBase Tree Display for Gene: WBGene00094831

WBGene00094831 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 2
    Name: CGC_name: Ppa-icl-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA05277
      Molecular_name: PPA05277
        PPA05277.1
        PP75208
      Other_name: GENEPREDICTION_SNAP300000061737
        Ppa-gei-7 From_analysis: Inferred_from_orthology
        UMM-S71-25.7 Person_evidence: WBPerson606
      Public_name: Ppa-icl-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:04 WBPerson4055 Event: Imported: from NGASP
        2 16 Nov 2010 16:33:39 WBPerson2970 Name_change: CGC_name: Ppa-icl-1
                Other_name: Ppa-gei-7
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: icl
    RNASeq_FPKM: WBls:0000032 57.5468 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 36.6078 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        52.2767 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00175590
      00175591
      00175592
      00175593
      00175594
    Ortholog: WBGene00001564 Caenorhabditis elegans From_analysis: OMA
            WormBase-Compara
      WBGene00028630 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057839 Caenorhabditis remanei From_analysis: OMA
            WormBase-Compara
      WBGene00163609 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00121875 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g1673 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g644 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g18761 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6102 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8398 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11814 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6648 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1629 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11677 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g28029 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19675 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00299.g8772 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_28943.g27688 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_29059.g27697 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-icl-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold518.g2766 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02326.g25993 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12926 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_019498 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00081 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9980 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50035400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12342 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrV_pilon.g13096 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00259187 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294046 Trichuris muris From_analysis: WormBase-Compara
      WBGene00297581 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable isocitrate lyase activity and malate synthase activity. Predicted to be involved in glyoxylate cycle. Is an ortholog of C. elegans icl-1. In C. elegans, icl-1 is involved in determination of adult lifespan. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA05277
    Corresponding_CDS_history: PPA05277:pp270
      PPA05277:pp273
    Corresponding_transcript: PPA05277.1
    Other_sequence: FG619363.1
      AYC01665_1
      AW506054.1
      MHC00184_1
      FC548176.1
      Oden_isotig05469
      EL888018.1
      FC549444.1
      FD515196.1
      FC541978.1
      GW410943.1
      MJC01392_1
      SR02290
      MH03098
      Dviv_isotig05125
      Dviv_isotig32331
      XI01217
      AYC01367_1
      Acan_isotig05605
      EX560839.1
      XIC05545_1
      TDC00774_1
      JI165821.1
      EX007788.1
      FK800340.1
      Tcol_isotig18451
      FC817597.1
      XIC00686_1
      Acan_isotig07892
      MI01997
      CJC01665_1
      CR08541
      FK801859.1
      PPC04882_1
      FK804358.1
      MA00087
      PP00724
      Tcol_isotig03900
      Oden_isotig05467
      CR03161
      PT01066
      EE724201.1
      Oden_isotig05462
      GO239180.1
      Acan_isotig05604
      FK805878.1
      AYC02321_1
      EX552576.1
      CR06709
      PT00695
      AE03542
      AE01437
      MA02057
      ES744080.1
      Acan_isotig19834
      TIC00171_1
      MA00488
      PPC06647_1
      CRC00083_1
      MI00448
      TDC01692_1
      HGC03666_1
      Tcol_isotig22193
      FK805190.1
      EX007334.1
      MI03755
      ASC24796_1
      Tcir_isotig19771
      SS02736
      MAC00206_1
      SRC01613_1
      CBC00208_1
      PTC02351_1
      FC553876.1
      MA02505
      FK807059.1
      Hbac_isotig00512
      MIC01879_1
      MAC00291_1
      HBC05403_1
      FK807965.1
      FK801682.1
      FG975051.1
      HG00709
      AYC01367_2
      FK800807.1
      FK801402.1
      CB039200.1
      PTC00368_1
      Dviv_isotig05126
      AYC03153_1
      AE00930
      CSC01567_1
      PT02891
      ACC16748_1
      ACC04339_1
      BUC00400_1
      EX558867.1
      ACC21448_1
      HBC00154_1
      GRC00299_1
      FK800519.1
      EX015032.1
      PT02591
      FK808721.1
      PTC00864_1
      FG588794.1
      FG589269.1
      EX007702.1
      HGC07137_1
      AJ616380.1
      PSC01513_2
      FK805634.1
      XI04908
      CJC01012_1
      EX010031.1
      MJ04009
      SR02429
      MJ02175
      AE00313
      EX913495.1
      EX015094.1
      Oden_isotig05464
      GRC03187_1
      Tcir_isotig05786
      XIC03796_1
      HS00738
      AE01181
      TVC00225_1
      XI03949
      EX556537.1
      FC540940.1
      HG08946
      MI04422
      SRC02429_1
      EX555766.1
      FC811995.1
      ES409050.1
      FC539727.1
      PPC16020_1
      AS01541
      FK805010.1
      FK670269.1
      BXC01116_1
      CJC00737_1
      FK804426.1
      AS17955
      CBC12468_1
      Oden_isotig05465
      CR05560
      TV00265
      CBC13865_1
      FK808212.1
      ES413516.1
      GRC02275_1
      BXC00459_1
      Tcol_isotig18586
      EX916265.1
      FK804601.1
      MI00879
      FK801414.1
      Hbac_isotig03072
      PT00271
      ASC25612_1
      BXC02061_1
      FK807680.1
      TDC00433_1
      FG589268.1
      MJ02345
      PPC08865_1
      FC555441.1
      PVC03980_1
      Oden_isotig05468
      Oden_isotig05466
      FK808687.1
      FC547478.1
      CB038666.1
      FK803610.1
      AE04934
      Oden_isotig05463
      AE01152
      HSC00387_1
      PPC03332_1
      HO652363.1
      HC06151
      FC549746.1
      AE04162
      AF187048.1
      Acan_isotig14410
      CB037012.1
      CBC15834_1
      MJC01180_1
      AE02457
      HG04521
      ES740713.1
      FC544689.1
      BUC00276_1
      Tcol_isotig03899
      ACC03615_1
      AB186896.1
      FK803915.1
      EX565860.1
      MIC00655_1
      CBC12019_1
      SSC05860_1
      GR13149
  Experimental_info: Microarray_results: GPL14372_Probes_6731
      GPL14372_Probes_50485
      GPL14372_Probes_50488
      GPL14372_Probes_50489
      GPL14372_Probes_50490
      GPL14372_Probes_50491
    Expression_cluster: WBPaper00041207:PP_dauer_up
      WBPaper00041606:PP_S.marcescens_regulated
      WBPaper00041606:PP_X.nematophila_regulated
  Method: Gene