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WormBase Tree Display for Gene: WBGene00096469

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Name Class

WBGene00096469SMapS_parentSequencePPA_ChrI
IdentityVersion7
NameCGC_namePpa-sedl-1From_analysisInferred_from_orthology
Sequence_namePPA06915
Molecular_namePPA06915
PPA06915.1
PP63056
Other_nameGENEPREDICTION_SNAP300000064302
GENEPREDICTION_SNAP300000084716
UMM-S139-21.43Person_evidenceWBPerson606
Public_namePpa-sedl-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
224 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00117564
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_namePpa-sedl-1.5
408 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
508 May 2019 10:09:28WBPerson1983Name_changeCGC_namePpa-sedl-1.5
628 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
728 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-sedl-1
Acquires_mergeWBGene00117564
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsedl
RNASeq_FPKMWBls:00000326.92624From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010110.2242From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
5.71681From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
6.92624From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
GO_annotation00176474
00176475
00176476
00176477
00176478
OrthologWBGene00036836Caenorhabditis briggsaeFrom_analysisOMA
WBGene00036840Caenorhabditis briggsaeFrom_analysisOMA
WBGene00036841Caenorhabditis briggsaeFrom_analysisOMA
WBGene00036843Caenorhabditis briggsaeFrom_analysisOMA
WBGene00151104Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00154704Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00030032Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00226460Brugia malayiFrom_analysisWormBase-Compara
WBGene00021046Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240409Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g3668Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3476Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3530Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13458Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20692Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24592Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16545Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19609Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27715Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19532Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00174.g6215Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sedl-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00424.g11175Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03343Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022062Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11487Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21017Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0004820Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00060349Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g18440Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00265547Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291428Trichuris murisFrom_analysisWormBase-Compara
WBGene00297452Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans sedl-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA06915
Corresponding_transcriptPPA06915.1
Other_sequenceTcol_isotig19691
BE239188.1
EL890473.1
DI01969
MJ02398
ES672515.1
ES672076.1
JI219643.1
GP00444
JI222070.1
HCC04746_1
EL889879.1
Dviv_isotig07099
ES672000.1
HGC00966_1
Tcir_isotig06781
EL890621.1
AA618747.1
ES672106.1
OOC03130_1
ES672578.1
ES672362.1
Tcir_isotig21303
DV019804.1
CR03780
PPC02554_1
EL887879.1
FC549696.1
TSC11099_1
AS11896
BE238948.1
TV01239
HC06213
ES672195.1
JI172000.1
JI483299.1
ASC04531_1
FG352130.1
AS18055
AS08865
FC813140.1
PP01179
AS16581
FC809979.1
ACC03634
TV00615
PT04630
MIC02796_1
GT570795.1
ES672421.1
Tcol_isotig12734
FG588230.1
CBC00357_3
DW718382.1
CR04790
ASC06659_1
Hbac_isotig07551
BM00989
Tcir_isotig12843
CR00360
DW718629.1
MJ04509
XI03016
JI170186.1
GT571327.1
JI233463.1
PPC13531_1
MA01882
SR01232
JI215293.1
DAC02566_1
DA04114
ES565407.1
JK315828.1
TV01676
HC07301
CR01651
GT571260.1
AE03345
GT571541.1
ASC09974_1
XI00303
AS14215
BE225385.1
TV00921
Name_isotig07322
AI130226.1
TX01493
AS11593
JI175568.1
FG350936.1
DW718606.1
HG01409
GT571433.1
PVC02469_1
OVC00360_1
ES672070.1
GP01648
HC06282
GR14112
ASC02058_1
ES672840.1
SR04871
SR03628
EL887968.1
GRC00145_1
GT571116.1
DI01564
MA03182
AS09096
PT04439
HS00678
DA05532
MPC00890_1
JI210948.1
GO252219.1
JI218414.1
PT04631
CJC05478_1
AS02141
Dviv_isotig07098
MI03262
GO253118.1
Acan_isotig16204
DI01968
JI461590.1
BE239002.1
FC815819.1
FC810349.1
TV01555
FC812285.1
BE238977.1
Experimental_infoMicroarray_resultsGPL14372_Probes_9195
GPL14372_Probes_9196
GPL14372_Probes_9197
GPL14372_Probes_9198
GPL14372_Probes_9200
GPL14372_Probes_9202
GPL14372_Probes_9203
GPL14372_Probes_9204
GPL14372_Probes_54551
GPL14372_Probes_54552
GPL14372_Probes_54553
GPL14372_Probes_54554
Expression_clusterWBPaper00041207:PP_dauer_up
Remark[190208 pad] The CGC name Ppa-sedl-1.5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-sedl-1.5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene