WormBase Tree Display for Gene: WBGene00096501
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| WBGene00096501 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-ech-3.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA06947 | ||||||||
| Molecular_name | PPA06947 | ||||||||
| PPA06947.1 | |||||||||
| PP28665 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000064334 | ||||||||
| UMS-S139-23.18 | Person_evidence | WBPerson606 | |||||||
| Ppa-ech-3 | |||||||||
| Public_name | Ppa-ech-3.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:47 | WBPerson2970 | Name_change | CGC_name | Ppa-ech-3 | ||||
| 3 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-ech-3.1 | ||||
| Other_name | Ppa-ech-3 | ||||||||
| 4 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-ech-3.1 | ||||
| 6 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ech-3.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ech | ||||||||
| RNASeq_FPKM | WBls:0000032 | 35.8052 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 24.0194 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 35.8052 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 36.2529 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: ClpP/crotonase-like domain superfamily and Enoyl-CoA hydratase/isomerase. Is an ortholog of C. elegans ech-3. In C. elegans, ech-3 is involved in IRE1-mediated unfolded protein response. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA06947 | |||||||
| Corresponding_transcript | PPA06947.1 | ||||||||
| Other_sequence | EX566835.1 | ||||||||
| CRC05212_1 | |||||||||
| Acan_isotig11141 | |||||||||
| CR01499 | |||||||||
| ACC19151_1 | |||||||||
| Oden_isotig15451 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_54465 | |||||||
| GPL14372_Probes_54466 | |||||||||
| GPL14372_Probes_54467 | |||||||||
| GPL14372_Probes_54468 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-ech-3.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-ech-3.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
