WormBase Tree Display for Gene: WBGene00096578

WBGene00096578 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 3
    Name: CGC_name: Ppa-sox-2 From_analysis: Inferred_from_orthology
      Sequence_name: PPA07024
      Molecular_name: PPA07024
        PPA07024.1
        PP54229
      Other_name: GENEPREDICTION_SNAP300000064411
        GENEPREDICTION_SNAP300000074339
        UMM-S139-27.34 Person_evidence: WBPerson606
      Public_name: Ppa-sox-2
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:04 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00107200
        3 24 Nov 2017 09:46:52 WBPerson4055 Event: Acquires_merge: WBGene00203494
      Acquires_merge: WBGene00107200
        WBGene00203494
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sox
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
            RNASeq.pristionchus.total_over_all_stages.control_mean
    Ortholog (17)
    Paralog: WBGene00089564 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00100600 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00108272 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00115448 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00117464 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00277953 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: HMG (high mobility group) box; High mobility group box domain superfamily; and High mobility group box domain. Is an ortholog of C. elegans sox-2. In C. elegans, sox-2 is involved in neuron fate specification. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA07024
    Corresponding_transcript: PPA07024.1
    Other_sequence (16)
  Experimental_info: Microarray_results: GPL14372_Probes_9087
      GPL14372_Probes_9088
      GPL14372_Probes_9089
      GPL14372_Probes_9090
      GPL14372_Probes_9091
  Method: Gene