WormBase Tree Display for Gene: WBGene00097947
expand all nodes | collapse all nodes | view schema
| WBGene00097947 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-casc-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA08393 | ||||||||
| Molecular_name | PPA08393 | ||||||||
| PPA08393.1 | |||||||||
| PP55322 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000064877 | ||||||||
| GENEPREDICTION_SNAP300000064878 | |||||||||
| GENEPREDICTION_SNAP300000064879 | |||||||||
| UMM-S66-44.2 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-casc-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00097948 | ||||
| 3 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00097949 | ||||
| 4 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Ppa-casc-3.1 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-casc-3 | ||||
| Acquires_merge | WBGene00097948 | ||||||||
| WBGene00097949 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | casc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 17.0442 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 16.8644 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 17.0442 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 33.5489 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00177161 | ||||||||
| 00177162 | |||||||||
| 00177163 | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of exon-exon junction complex. Is an ortholog of C. elegans casc-3. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA08393 | |||||||
| Corresponding_transcript | PPA08393.1 | ||||||||
| Other_sequence | TSC09767_1 | ||||||||
| ES563427.1 | |||||||||
| PPC09288_1 | |||||||||
| MH04730 | |||||||||
| Experimental_info | Microarray_results (13) | ||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [210528 pad] The CGC name Ppa-casc-3.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
