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WormBase Tree Display for Gene: WBGene00098516

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Name Class

WBGene00098516SMapS_parentSequencePPA_ChrX
IdentityVersion4
NameCGC_namePpa-spl-2From_analysisInferred_from_orthology
Sequence_namePPA08962
Molecular_namePPA08962
PPA08962.1
PP72414
Other_nameGENEPREDICTION_SNAP300000065502
UMM-S250-13.7Person_evidenceWBPerson606
Ppa-tag-38
Public_namePpa-spl-2
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
218 Nov 2010 11:54:47WBPerson2970Name_changeCGC_namePpa-tag-38
303 Jul 2018 11:45:27WBPerson1983Name_changeCGC_nameRetired non-elegans tag gene names
408 Feb 2019 15:42:26WBPerson1983Name_changeCGC_namePpa-spl-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspl
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
RNASeq.pristionchus.total_over_all_stages.control_mean
Ortholog (36)
ParalogWBGene00090305Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00091970Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00096395Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110779Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00114297Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00118138Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278826Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304750Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Pyridoxal phosphate-dependent transferase, major domain and Pyridoxal phosphate-dependent transferase. Is an ortholog of C. elegans spl-2. In C. elegans, spl-2 is involved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA08962
Corresponding_transcriptPPA08962.1
MethodGene