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WormBase Tree Display for Gene: WBGene00099809

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Name Class

WBGene00099809SMapS_parentSequencePPA_ChrX
IdentityVersion7
NameCGC_namePpa-tbc-18From_analysisInferred_from_orthology
Sequence_namePPA10255
Molecular_namePPA10255
PPA10255.1
PP52678
Other_nameGENEPREDICTION_SNAP300000066792
GENEPREDICTION_SNAP300000066794
UMM-S2845-2.17Person_evidenceWBPerson606
Public_namePpa-tbc-18
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
224 Nov 2017 09:46:49WBPerson4055EventAcquires_mergeWBGene00099811
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-tbc-18
408 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
508 May 2019 10:09:23WBPerson1983Name_changeCGC_namePpa-tbc-18
628 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
728 Jul 2021 11:12:27WBPerson1983Name_changeCGC_namePpa-tbc-18
Acquires_mergeWBGene00099811
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtbc
RNASeq_FPKMWBls:00000324.30359From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.43453From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00141388Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00041245Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224251Brugia malayiFrom_analysisWormBase-Compara
WBGene00018281Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00129220Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241957Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g2568Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8123Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16018Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9052Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5065Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19033Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12259Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10259Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16254Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2638Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00059.g3003Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tbc-18Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11016Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00671.g14243Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02009Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025310Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07317Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16991Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0163800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00065492Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g19568Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267028Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296313Trichuris murisFrom_analysisWormBase-Compara
WBGene00300984Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00089798Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092129Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092132Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092386Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00097114Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105283Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105408Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00106992Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00107226Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00111595Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00114782Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00116780Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00204542Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274540Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: RUN domain; SH3-like domain superfamily; SH3 domain; Rab-GTPase-TBC domain superfamily; RUN domain superfamily; and Rab-GTPase-TBC domain. Is an ortholog of C. elegans tbc-18.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA10255
Corresponding_transcriptPPA10255.1
Other_sequenceTX00674
EY471544.1
FC552295.1
FC541915.1
Acan_isotig12432
HC05740
EY467502.1
Dviv_isotig12622
RS08726
JI483229.1
RSC02282_1
SC01076
EY458880.1
Dviv_isotig12623
TCC00295_1
FC547892.1
JI166400.1
HCC07600_1
TX00879
ACC11416_1
EY473558.1
Acan_isotig04134
ACC09236_1
EX555681.1
Oden_isotig18675
TCC00058_1
GR978127.1
EY464975.1
CJC01934_1
Acan_isotig04135
Dviv_isotig12624
JO470338.1
FC549436.1
FC551850.1
Experimental_infoMicroarray_resultsGPL14372_Probes_22104
GPL14372_Probes_22105
GPL14372_Probes_22106
GPL14372_Probes_22107
GPL14372_Probes_74639
GPL14372_Probes_74641
Expression_clusterWBPaper00041606:PP_X.nematophila_regulated
Remark[190208 pad] The CGC name Ppa-tbc-18 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-tbc-18 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene