WormBase Tree Display for Gene: WBGene00100746
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| WBGene00100746 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | Ppa-nhr-49 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA11192 | ||||||||
| Molecular_name | PPA11192 | ||||||||
| PPA11192.1 | |||||||||
| PP67895 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000068112 | ||||||||
| GENEPREDICTION_SNAP300000068113 | |||||||||
| GENEPREDICTION_SNAP300000068115 | |||||||||
| UMM-S13-42.33 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-nhr-49 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00100747 | ||||
| 3 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00100749 | ||||
| Acquires_merge | WBGene00100747 | ||||||||
| WBGene00100749 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00178310 | ||||||||
| 00178311 | |||||||||
| 00178312 | |||||||||
| 00178313 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-49. In C. elegans, nhr-49 is involved in determination of adult lifespan; positive regulation of transcription from RNA polymerase II promoter in response to stress; and regulation of fatty acid metabolic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA11192 | |||||||
| Corresponding_transcript | PPA11192.1 | ||||||||
| Other_sequence (77) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_18683 | |||||||
| GPL14372_Probes_18684 | |||||||||
| GPL14372_Probes_18685 | |||||||||
| GPL14372_Probes_18686 | |||||||||
| GPL14372_Probes_18687 | |||||||||
| GPL14372_Probes_69638 | |||||||||
| GPL14372_Probes_69639 | |||||||||
| GPL14372_Probes_69640 | |||||||||
| GPL14372_Probes_69643 | |||||||||
| GPL14372_Probes_69645 | |||||||||
| Method | Gene |
