WormBase Tree Display for Gene: WBGene00101609
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WBGene00101609 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Identity | Version | 7 | ||||
Name | Sequence_name | PPA12055 | ||||
Molecular_name | PPA12055 | |||||
PPA12055.1 | ||||||
PP58357 | ||||||
Other_name | GENEPREDICTION_SNAP300000068941 | |||||
GENEPREDICTION_SNAP300000079588 | ||||||
GENEPREDICTION_SNAP300000078796 | ||||||
UMS-S2845-3.28 | Person_evidence | WBPerson606 | ||||
Ppa-dylt-1 | From_analysis | Inferred_from_orthology | ||||
Public_name | PPA12055 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (7) | |||||
Acquires_merge | WBGene00110049 | |||||
WBGene00111806 | ||||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
RNASeq_FPKM | WBls:0000032 | 5.7665 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 3.28416 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
4.08597 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00178720 | |||||
00178721 | ||||||
00178722 | ||||||
Ortholog (31) | ||||||
Paralog | WBGene00278564 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
Structured_description | Automated_description | Predicted to enable metal ion transmembrane transporter activity. Predicted to be involved in metal ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans dylt-1; smf-1; and smf-2. In C. elegans, smf-1 is involved in monoatomic cation homeostasis; negative regulation of cellular response to manganese ion; and response to manganese ion. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA12055 | ||||
Corresponding_transcript | PPA12055.1 | |||||
Other_sequence (26) | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_74659 | ||||
GPL14372_Probes_74661 | ||||||
GPL14372_Probes_74662 | ||||||
GPL14372_Probes_74663 | ||||||
GPL14372_Probes_74664 | ||||||
GPL14372_Probes_74665 | ||||||
GPL14372_Probes_74666 | ||||||
GPL14372_Probes_74667 | ||||||
GPL14372_Probes_74668 | ||||||
GPL14372_Probes_74669 | ||||||
Remark | [190208 pad] The CGC name Ppa-smf-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[210528 pad] The CGC name Ppa-smf-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |