WormBase Tree Display for Gene: WBGene00101647
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| WBGene00101647 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-ntl-9 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA12093 | ||||||||
| Molecular_name | PPA12093 | ||||||||
| PPA12093.1 | |||||||||
| PP71047 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000068979 | ||||||||
| UMM-S2864-22.25 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ntl-9 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 25 Nov 2011 15:07:57 | WBPerson2970 | Name_change | CGC_name | Ppa-ntl-9 | ||||
| 3 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| 4 | 08 Feb 2019 15:42:26 | WBPerson1983 | Name_change | CGC_name | Ppa-ntl-9 | ||||
| 5 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-ntl-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ntl | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.20689 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.868718 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 1.0252 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00178744 | ||||||||
| 00178745 | |||||||||
| 00178746 | |||||||||
| 00178747 | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00096286 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00103471 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and ribonucleoside binding activity. Predicted to be involved in DNA-templated transcription. Is an ortholog of C. elegans ntl-9 and rpb-2. In C. elegans, ntl-9 is involved in hemidesmosome assembly. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA12093 | |||||||
| Corresponding_transcript | PPA12093.1 | ||||||||
| Other_sequence (123) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_80444 | |||||||
| GPL14372_Probes_80445 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [180319 gw3] The CGC name Ppa-ntl-9 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | ||||||
| [190507 pad] The CGC name Ppa-ntl-9 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
