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WormBase Tree Display for Gene: WBGene00102518

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Name Class

WBGene00102518SMapS_parentSequencePPA_ChrI
IdentityVersion1
NameCGC_namePpa-clec-1From_analysisInferred_from_orthology
Sequence_namePPA12964
Molecular_namePPA12964
PPA12964.1
PP06233
Other_nameGENEPREDICTION_SNAP300000069810
UMM-S2844-9.31Person_evidenceWBPerson606
Public_namePpa-clec-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
RNASeq_FPKMWBls:000003223.035From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101122.497From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
23.035From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
48.5107From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
Ortholog (30)
ParalogWBGene00204256Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Is an ortholog of C. elegans clec-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA12964
Corresponding_transcriptPPA12964.1
Other_sequence (46)
Experimental_infoMicroarray_resultsGPL14372_Probes_81086
GPL14372_Probes_81088
Expression_clusterWBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Down
WBPaper00041207:PP_dauer_down
WBPaper00041606:PP_S.marcescens_regulated
WBPaper00041606:PP_X.nematophila_regulated
MethodGene