WormBase Tree Display for Gene: WBGene00104423
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| WBGene00104423 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-cima-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA14869 | ||||||||
| Molecular_name | PPA14869 | ||||||||
| PPA14869.1 | |||||||||
| PP73777 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000071331 | ||||||||
| UMS-S283-1.2 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-cima-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-cima-1 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-cima-1 | ||||
| 5 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-cima-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cima | ||||||||
| RNASeq_FPKM | WBls:0000032 | 5.52837 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 16.3235 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 5.52837 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 7.28396 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00179886 | ||||||||
| 00179887 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (53) | |||||||||
| Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Is an ortholog of C. elegans cima-1. In C. elegans, cima-1 is involved in regulation of protein catabolic process and regulation of synapse organization. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA14869 | |||||||
| Corresponding_transcript | PPA14869.1 | ||||||||
| Other_sequence (42) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_52261 | |||||||
| GPL14372_Probes_52262 | |||||||||
| Expression_cluster | WBPaper00064862:Ppa-sul-2(tu1069)_4M2_Up | ||||||||
| WBPaper00041207:PP_dauer_down | |||||||||
| Remark | [190208 pad] The CGC name Ppa-cima-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-cima-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
