WormBase Tree Display for Gene: WBGene00104656
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| WBGene00104656 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | Sequence_name | PPA15102 | |||||||
| Molecular_name | PPA15102 | ||||||||
| PPA15102.1 | |||||||||
| PP63288 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074798 | ||||||||
| UMM-S66-26.29 | Person_evidence | WBPerson606 | |||||||
| Ppa-chc-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | PPA15102 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-chc-1.5 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Ppa-chc-1.5 | ||||
| 5 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-chc-1 | ||||
| Other_name | Ppa-chc-1.5 | ||||||||
| 6 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Ppa-chc-1.5 | ||||
| Other_name | Ppa-chc-1 | ||||||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 10.7125 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 4.21699 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 4.9765 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00179978 | ||||||||
| 00179979 | |||||||||
| 00179980 | |||||||||
| 00179981 | |||||||||
| 00179982 | |||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00093828 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00272192 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00275955 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00275959 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable structural molecule activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of clathrin coat of coated pit and clathrin coat of trans-Golgi network vesicle. Is an ortholog of C. elegans chc-1. In C. elegans, chc-1 is involved in several processes, including apical protein localization; determination of adult lifespan; and positive regulation of clathrin-dependent endocytosis. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15102 | |||||||
| Corresponding_transcript | PPA15102.1 | ||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_46970 | |||||||
| GPL14372_Probes_46971 | |||||||||
| GPL14372_Probes_46972 | |||||||||
| GPL14372_Probes_46973 | |||||||||
| GPL14372_Probes_46975 | |||||||||
| GPL14372_Probes_46976 | |||||||||
| GPL14372_Probes_46977 | |||||||||
| GPL14372_Probes_46978 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-chc-1.5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-chc-1.5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
