WormBase Tree Display for Gene: WBGene00105039
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| WBGene00105039 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | Sequence_name | PPA15485 | |||||||
| Molecular_name | PPA15485 | ||||||||
| PPA15485.1 | |||||||||
| PP56932 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000072235 | ||||||||
| UMM-S2840-22.33 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA15485 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-pgp-11 | ||||
| 3 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Ppa-pgp-11 | ||||
| 5 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-pgp-11 | ||||
| 7 | 28 Jul 2021 11:12:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 4.56767 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.52256 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00180201 | ||||||||
| 00180202 | |||||||||
| 00180203 | |||||||||
| 00180204 | |||||||||
| 00180205 | |||||||||
| Ortholog (11) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Automated_description | Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pgp-11. In C. elegans, pgp-11 is involved in regulatory ncRNA-mediated post-transcriptional gene silencing. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15485 | |||||||
| Corresponding_transcript | PPA15485.1 | ||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_58199 | |||||||
| GPL14372_Probes_58200 | |||||||||
| GPL14372_Probes_58201 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [191001 pad] The CGC name Ppa-pgp-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200603 pad] The CGC name Ppa-pgp-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210728 pad] The CGC name Ppa-pgp-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
