WormBase Tree Display for Gene: WBGene00106676
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| WBGene00106676 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | Ppa-shl-1 | |||||||
| Sequence_name | PPA17122 | ||||||||
| Molecular_name | PPA17122 | ||||||||
| PPA17122.1 | |||||||||
| PP75163 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000073835 | ||||||||
| UMM-S233-9.18 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-shl-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:47 | WBPerson2970 | Name_change | CGC_name | Ppa-shl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | shl | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.06185 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.49898 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 2.06185 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 2.43509 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00180847 | ||||||||
| 00180848 | |||||||||
| 00180849 | |||||||||
| 00180850 | |||||||||
| 00180851 | |||||||||
| 00180852 | |||||||||
| 00180853 | |||||||||
| 00180854 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans shl-1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17122 | |||||||
| Corresponding_CDS_history | PPA17122:pp273 | ||||||||
| Corresponding_transcript | PPA17122.1 | ||||||||
| Other_sequence (29) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_71279 | |||||||
| GPL14372_Probes_71281 | |||||||||
| GPL14372_Probes_71282 | |||||||||
| GPL14372_Probes_71283 | |||||||||
| GPL14372_Probes_71285 | |||||||||
| Method | Gene |
