WormBase Tree Display for Gene: WBGene00106693
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| WBGene00106693 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-hcf-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA17139 | ||||||||
| Molecular_name | PPA17139 | ||||||||
| PPA17139.1 | |||||||||
| PP62551 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000073852 | ||||||||
| UMA-S233-3.51 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-hcf-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hcf | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 27.1932 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 9.0644 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00180866 | ||||||||
| 00180867 | |||||||||
| 00180868 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00093076 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00272835 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00305986 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable peptidase activity. Predicted to be involved in signal peptide processing. Predicted to be located in membrane. Is an ortholog of C. elegans hcf-1. In C. elegans, hcf-1 is involved in several processes, including dauer exit; determination of adult lifespan; and regulation of DNA-templated transcription. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17139 | |||||||
| Corresponding_transcript | PPA17139.1 | ||||||||
| Method | Gene |
