WormBase Tree Display for Gene: WBGene00106946
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| WBGene00106946 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-rab-14 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA17392 | ||||||||
| Molecular_name | PPA17392 | ||||||||
| PPA17392.1 | |||||||||
| PP12098 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074087 | ||||||||
| UMM-S207-14.58 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-rab-14 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rab | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 2.83638 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 8.50913 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00181028 | ||||||||
| 00181029 | |||||||||
| 00181030 | |||||||||
| 00181031 | |||||||||
| 00181032 | |||||||||
| 00181033 | |||||||||
| 00181034 | |||||||||
| 00181035 | |||||||||
| 00181036 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (37) | |||||||||
| Structured_description | Automated_description | Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in defense response to bacterium; intracellular transport; and phagosome maturation. Predicted to be located in phagocytic vesicle; recycling endosome; and trans-Golgi network. Is an ortholog of C. elegans rab-14. In C. elegans, rab-14 is involved in phagolysosome assembly involved in apoptotic cell clearance and phagosome acidification involved in apoptotic cell clearance. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17392 | |||||||
| Corresponding_transcript | PPA17392.1 | ||||||||
| Other_sequence (40) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_72807 | |||||||
| GPL14372_Probes_72808 | |||||||||
| GPL14372_Probes_72809 | |||||||||
| GPL14372_Probes_72810 | |||||||||
| Method | Gene |
