WormBase Tree Display for Gene: WBGene00108253
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| WBGene00108253 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-aco-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18699 | ||||||||
| Molecular_name | PPA18699 | ||||||||
| PPA18699.1 | |||||||||
| PP68186 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075513 | ||||||||
| UMM-S293-1.17 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-aco-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aco | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.00475 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 14.1884 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 4.00475 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 6.06438 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00097679 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Aconitase/Iron-responsive element-binding protein 2; Aconitase/3-isopropylmalate dehydratase, swivel; Aconitase family (aconitate hydratase); Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3; Aconitase C-terminal domain; Aconitase A/isopropylmalate dehydratase small subunit, swivel domain; and Aconitase, iron-sulfur domain. Is an ortholog of C. elegans aco-1. In C. elegans, aco-1 is involved in tricarboxylic acid metabolic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18699 | |||||||
| Corresponding_transcript | PPA18699.1 | ||||||||
| Other_sequence (60) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_22902 | |||||||
| GPL14372_Probes_22903 | |||||||||
| GPL14372_Probes_22904 | |||||||||
| GPL14372_Probes_75398 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Method | Gene |
