WormBase Tree Display for Gene: WBGene00108363

WBGene00108363 SMap: S_parent: Sequence: PPA_ChrX
  Identity: Version: 7
    Name: CGC_name: Ppa-lpr-5 From_analysis: Inferred_from_orthology
      Sequence_name: PPA18809
      Molecular_name: PPA18809
        PPA18809.1
        PP54294
      Other_name: GENEPREDICTION_SNAP300000075623
        GENEPREDICTION_SNAP300000075624
        UMM-S293-6.12 Person_evidence: WBPerson606
      Public_name: Ppa-lpr-5
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 23 Apr 2010 14:43:28 WBPerson2970 Name_change: CGC_name: Ppa-lpr-5
        3 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00108364
        4 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Ppa-lpr-5
        6 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        7 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-lpr-5
      Acquires_merge: WBGene00108364
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lpr
    RNASeq_FPKM: WBls:0000032 7.07832 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 13.3749 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        6.81774 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        7.07832 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
    Ortholog: WBGene00012255 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
      WBGene00012256 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00037112 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00037113 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
      WBGene00058356 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058357 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00152616 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00123459 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      WBGene00144754 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00123546 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00226445 Brugia malayi From_analysis: WormBase-Compara
      WBGene00241476 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g2590 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1603 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12193 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14456 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15899 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10069 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1375 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20656 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19647 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6499 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00036.g2022 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lpr-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold515.g2642 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00025.g1446 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01200 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023702 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00492 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5496 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0081600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19998 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00267878 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288716 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: Calycin. Is an ortholog of C. elegans lpr-5. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA18809
    Corresponding_transcript: PPA18809.1
    Other_sequence: EY464456.1
      HBC01041_1
      EX912275.1
      Hbac_isotig03327
      Hbac_isotig04067
      EX910466.1
      GR17371
      FG979480.1
      JI170195.1
      JI167521.1
      Dviv_isotig16610
      FD515061.1
      OOC00286_1
      CSC00773_1
      CR08519
      CRC04832_1
      PPC10036_1
      FC816174.1
      HBC01003_1
      CBC05010_1
      CRC07131_1
      ZPC00075_1
      DI01452
      Dviv_isotig18876
      EY467802.1
      ES412242.1
      ES740305.1
      ACC29625_1
      FF680768.1
      Dviv_isotig27939
      Oden_isotig26884
      FG973364.1
      Dviv_isotig16611
      PP00970
      PPC04746_1
      DIC00995_1
      GRC04712_1
      ES411012.1
      ZP00143
      GR17370
      Dviv_isotig29652
      Tcir_isotig24825
      ACC39914_1
      JI178490.1
      SRC02742_1
      Oden_isotig20801
      FG978489.1
      Oden_isotig24669
      FG349746.1
      BXC01938_1
      Tcir_isotig23628
      EX912323.1
      FF680582.1
      HBC01022_1
  Experimental_info: Microarray_results: GPL14372_Probes_75673
      GPL14372_Probes_75674
      GPL14372_Probes_75675
      GPL14372_Probes_75676
      GPL14372_Probes_75677
      GPL14372_Probes_75678
    Expression_cluster: WBPaper00041207:PP_dauer_up
  Remark: [190208 pad] The CGC name Ppa-lpr-5 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-lpr-5 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene