WormBase Tree Display for Gene: WBGene00108859
expand all nodes | collapse all nodes | view schema
| WBGene00108859 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-epg-6 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA19305 | ||||||||
| Molecular_name | PPA19305 | ||||||||
| PPA19305.1 | |||||||||
| PP62890 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076118 | ||||||||
| UMM-S10-16.8 | Person_evidence | WBPerson606 | |||||||
| Ppa-epg-6.1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-epg-6 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-epg-6.1 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-epg-6 | ||||
| Other_name | Ppa-epg-6.1 | ||||||||
| 4 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-epg-6.1 | ||||
| Other_name | Ppa-epg-6 | ||||||||
| 5 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-epg-6 | ||||
| Other_name | Ppa-epg-6.1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | epg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.363837 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 1.09151 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00108435 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00102396 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Macrophage-expressed gene 1 protein; WD domain, G-beta repeat; WD40 repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans epg-6. In C. elegans, epg-6 is involved in autophagosome assembly. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA19305 | |||||||
| Corresponding_transcript | PPA19305.1 | ||||||||
| Other_sequence | GO252535.1 | ||||||||
| TSC07154_1 | |||||||||
| ES561928.1 | |||||||||
| Acan_isotig15232 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_82162 | |||||||
| GPL14372_Probes_82163 | |||||||||
| GPL14372_Probes_82164 | |||||||||
| GPL14372_Probes_82165 | |||||||||
| GPL14372_Probes_82166 | |||||||||
| Method | Gene |
