WormBase Tree Display for Gene: WBGene00109165
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WBGene00109165 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Identity | Version | 8 | ||||
Name | CGC_name | Ppa-gar-1 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA19611 | |||||
Molecular_name | PPA19611 | |||||
PPA19611.1 | ||||||
PP55868 | ||||||
Other_name | GENEPREDICTION_SNAP300000076446 | |||||
GENEPREDICTION_SNAP300000076447 | ||||||
UMM-S285-10.20 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-gar-1 | |||||
Species | Pristionchus pacificus | |||||
History (2) | ||||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | gar | |||||
RNASeq_FPKM | WBls:0000032 | 3.53861 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 1.17954 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00182096 | |||||
00182097 | ||||||
00182098 | ||||||
00182099 | ||||||
00182100 | ||||||
Ortholog (30) | ||||||
Paralog (14) | ||||||
Structured_description | Automated_description | Predicted to enable G protein-coupled acetylcholine receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Is an ortholog of C. elegans gar-1. In C. elegans, gar-1 is involved in cholinergic synaptic transmission. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA19611 | ||||
Corresponding_transcript | PPA19611.1 | |||||
Other_sequence | JI168572.1 | |||||
TSC03039_1 | ||||||
Dviv_isotig25020 | ||||||
ASC02740_1 | ||||||
TS04217 | ||||||
FJ609743.1 | ||||||
AS01817 | ||||||
JI172500.1 | ||||||
FJ609744.1 | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_32001 | ||||
GPL14372_Probes_32002 | ||||||
GPL14372_Probes_32003 | ||||||
GPL14372_Probes_32004 | ||||||
GPL14372_Probes_88995 | ||||||
GPL14372_Probes_88996 | ||||||
GPL14372_Probes_88998 | ||||||
GPL14372_Probes_88999 | ||||||
Remark | [190208 pad] The CGC name Ppa-gar-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[210528 pad] The CGC name Ppa-gar-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |