WormBase Tree Display for Gene: WBGene00109274
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WBGene00109274 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Identity | Version | 9 | ||||
Name | CGC_name | Ppa-lrk-1 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA19720 | |||||
Molecular_name | PPA19720 | |||||
PPA19720.1 | ||||||
PP61275 | ||||||
Other_name | GENEPREDICTION_SNAP300000076555 | |||||
GENEPREDICTION_SNAP300000076556 | ||||||
GENEPREDICTION_SNAP300000076558 | ||||||
UMM-S285-5.6 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-lrk-1 | |||||
Species | Pristionchus pacificus | |||||
History (2) | ||||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | lrk | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 0.72924 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
2.18772 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00182156 | |||||
00182157 | ||||||
00182158 | ||||||
Ortholog (32) | ||||||
Paralog (13) | ||||||
Structured_description | Automated_description | Predicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans lrk-1. In C. elegans, lrk-1 is involved in several processes, including axon extension involved in axon guidance; cellular localization; and negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA19720 | ||||
Corresponding_transcript | PPA19720.1 | |||||
Other_sequence | JI165362.1 | |||||
Dviv_isotig24879 | ||||||
JI163915.1 | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_4251 | ||||
GPL14372_Probes_4252 | ||||||
GPL14372_Probes_4255 | ||||||
GPL14372_Probes_43561 | ||||||
GPL14372_Probes_43562 | ||||||
GPL14372_Probes_43563 | ||||||
GPL14372_Probes_43566 | ||||||
GPL14372_Probes_43567 | ||||||
GPL14372_Probes_43568 | ||||||
Expression_cluster | WBPaper00041606:PP_X.nematophila_regulated | |||||
Remark | PPA19720 replaces Ppa-lrk-1 as Public_name | Curator_confirmed | WBPerson2970 | |||
[190208 pad] The CGC name Ppa-lrk-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
[210528 pad] The CGC name Ppa-lrk-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |