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WormBase Tree Display for Gene: WBGene00109350

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Name Class

WBGene00109350SMapS_parentSequencePPA_ChrIII
IdentityVersion2
NameCGC_namePpa-usp-46
Sequence_namePPA19796
Molecular_namePPA19796
PPA19796.1
PP54321
Other_nameGENEPREDICTION_SNAP300000076612
UMM-S341-4.26Person_evidenceWBPerson606
Public_namePpa-usp-46
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
218 Nov 2010 11:54:47WBPerson2970Name_changeCGC_namePpa-usp-46
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classusp
RNASeq_FPKMWBls:000003212.0293From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010112.0293From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
14.2065From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
8.74527From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
GO_annotation00182194
00182195
Ortholog (32)
ParalogWBGene00304963Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity. Is an ortholog of C. elegans usp-46. In C. elegans, usp-46 is involved in anterior/posterior axis specification, embryo; positive regulation of gene expression; and positive regulation of locomotion involved in locomotory behavior.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA19796
Corresponding_transcriptPPA19796.1
Other_sequence (35)
Experimental_infoMicroarray_resultsGPL14372_Probes_66356
GPL14372_Probes_66358
GPL14372_Probes_66359
GPL14372_Probes_66360
GPL14372_Probes_66361
GPL14372_Probes_66363
GPL14372_Probes_66364
GPL14372_Probes_66365
GPL14372_Probes_66366
Expression_clusterWBPaper00041207:PP_dauer_up
MethodGene