WormBase Tree Display for Gene: WBGene00109848

WBGene00109848 SMap: S_parent: Sequence: PPA_ChrX
  Identity: Version: 5
    Name: CGC_name: Ppa-nucb-1 Inferred_automatically: from gene merge
      Sequence_name: PPA20294
      Molecular_name: PPA20294
        PPA20294.1
        PP75337
      Other_name: GENEPREDICTION_SNAP300000077104
        GENEPREDICTION_SNAP300000077105
        UMM-S2857-2.11 Person_evidence: WBPerson606
      Public_name: Ppa-nucb-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 17 Nov 2017 15:19:42 WBPerson4055 Name_change: CGC_name: Ppa-nucb-1
        3 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00109849
        4 26 Sep 2019 11:50:05 WBPerson4055 Event: Split_into: WBGene00305035
        5 26 Sep 2019 11:50:23 WBPerson4055 Event: Split_into: WBGene00305036
      Acquires_merge: WBGene00109849
      Split_into: WBGene00305035
        WBGene00305036
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nucb
    RNASeq_FPKM: WBls:0000032 2.73608 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.912027 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00182473
    Ortholog: WBGene00009674 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00036893 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063115 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00082212 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00124547 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00141956 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00119372 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00214704 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00224338 Brugia malayi From_analysis: WormBase-Compara
      WBGene00241936 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g2933 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10896 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9687 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17554 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16066 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25100 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12729 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3503 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g27395 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15885 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00590.g12558 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nucb-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13694 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00005.g376 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01366 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023540 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07330 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11337 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0067500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19867 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00266792 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291850 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans nucb-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA20294
    Corresponding_CDS_history: PPA20294:pp273
    Corresponding_transcript: PPA20294.1
    Other_sequence: Tcol_isotig05211
      FC547644.1
      GRC01855_1
      EX010708.1
      JO468310.1
      ASC15237_1
      HSC00662_1
      Dviv_isotig11238
      SSC01953_1
      HC03338
      CK850674.1
      WBC01992_1
      BXC04643_1
      AE04587
      Acan_isotig07796
      Hbac_isotig00316
      HS01421
      JI167939.1
      CR01191
      AYC04485_1
      PSC02212_1
      ES743054.1
      EX015235.1
      GW410482.1
      SRC01558_1
      Name_isotig00930
      EX910086.1
      JI169491.1
      OOC00010_1
      Dviv_isotig11240
      HBC02747_1
      Tcir_isotig16808
      GR12815
      ACC10819_1
      Hbac_isotig00317
      BUC02038_1
      Tcol_isotig05209
      CJC09016_1
      CJC08016_1
      FC811522.1
      Tcir_isotig03490
      CRC08117_1
      EX011193.1
      EX015286.1
      SS02773
      EX007563.1
      FC817068.1
      Dviv_isotig11237
      FG589249.1
      Tcol_isotig18092
      HCC01710_1
      AS01260
      BMC00641_1
      EX562074.1
      Dviv_isotig11239
      CBC06318_1
      Oden_isotig18832
  Experimental_info: Microarray_results: GPL14372_Probes_76631
      GPL14372_Probes_76632
    Expression_cluster: WBPaper00041207:PP_dauer_down
  Method: Gene