WormBase Tree Display for Gene: WBGene00109972

WBGene00109972 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 3
    Name: CGC_name: Ppa-tra-3 Inferred_automatically: from gene merge
      Sequence_name: PPA20418
      Molecular_name: PPA20418
        PPA20418.1
        PP75379
      Other_name: GENEPREDICTION_SNAP300000077040
        GENEPREDICTION_SNAP300000080942
        UMM-S7-76.57 Person_evidence: WBPerson606
      Public_name: Ppa-tra-3
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 17 Nov 2017 15:19:42 WBPerson4055 Name_change: CGC_name: Ppa-tra-3
        3 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00113604
      Acquires_merge: WBGene00113604
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tra
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.716537 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        2.14961 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00182533
      00182534
    Ortholog (38)
    Paralog: WBGene00098664 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00101281 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00102417 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00104581 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00109362 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272039 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272855 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00277311 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00280481 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans tra-3. In C. elegans, tra-3 is involved in proteolysis and sex determination. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA20418
    Corresponding_CDS_history: PPA20418:pp273
    Corresponding_transcript: PPA20418.1
    Other_sequence (45)
  Experimental_info: Microarray_results: GPL14372_Probes_13247
      GPL14372_Probes_13248
      GPL14372_Probes_13249
      GPL14372_Probes_13250
      GPL14372_Probes_13252
      GPL14372_Probes_13254
      GPL14372_Probes_60141
  Method: Gene