WormBase Tree Display for Gene: WBGene00110599
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| WBGene00110599 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-xrn-1.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA21045 | ||||||||
| Molecular_name | PPA21045 | ||||||||
| PPA21045.1 | |||||||||
| PP66397 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000077819 | ||||||||
| UMA-S10-62.5 | Person_evidence | WBPerson606 | |||||||
| Ppa-xrn-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-xrn-1.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-xrn-1 | ||||
| 3 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-xrn-1.1 | ||||
| Other_name | Ppa-xrn-1 | ||||||||
| 4 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-xrn-1.1 | ||||
| 6 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-xrn-1 | ||||
| Other_name | Ppa-xrn-1.1 | ||||||||
| 7 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-xrn-1.1 | ||||
| Other_name | Ppa-xrn-1 | ||||||||
| 8 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 9 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-xrn-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xrn | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.65272 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 2.56839 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 3.05245 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00182841 | ||||||||
| 00182842 | |||||||||
| 00182843 | |||||||||
| 00182844 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00094693 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00273808 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273812 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273814 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable 5'-3' exonuclease activity and nucleic acid binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Is an ortholog of C. elegans xrn-1. In C. elegans, xrn-1 is involved in determination of adult lifespan and negative regulation of cytoplasmic mRNA processing body assembly. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA21045 | |||||||
| Corresponding_transcript | PPA21045.1 | ||||||||
| Other_sequence | Acan_isotig04475 | ||||||||
| Acan_isotig04474 | |||||||||
| AM743537.1 | |||||||||
| PPC10078_1 | |||||||||
| Dviv_isotig34913 | |||||||||
| JI475092.1 | |||||||||
| TDC03021_1 | |||||||||
| JI164132.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_16694 | |||||||
| GPL14372_Probes_16695 | |||||||||
| GPL14372_Probes_63496 | |||||||||
| GPL14372_Probes_65619 | |||||||||
| GPL14372_Probes_65621 | |||||||||
| GPL14372_Probes_65622 | |||||||||
| GPL14372_Probes_65625 | |||||||||
| GPL14372_Probes_65626 | |||||||||
| GPL14372_Probes_65628 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-xrn-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-xrn-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
