WormBase Tree Display for Gene: WBGene00112038
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| WBGene00112038 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-tofu-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA22484 | ||||||||
| Molecular_name | PPA22484 | ||||||||
| PPA22484.1 | |||||||||
| PP63923 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000079229 | ||||||||
| GENEPREDICTION_SNAP300000079230 | |||||||||
| UMM-S196-9.7 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-tofu-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00112039 | ||||
| 3 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-hrpu-1 | ||||
| 4 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-hrpu-1 | ||||
| 6 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-tofu-2 | ||||
| Acquires_merge | WBGene00112039 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tofu | ||||||||
| RNASeq_FPKM | WBls:0000032 | 3.09923 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.03308 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (12) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: SAP domain; B30.2/SPRY domain superfamily; SPRY domain; Concanavalin A-like lectin/glucanase domain superfamily; P-loop containing nucleoside triphosphate hydrolase; and AAA domain. Is an ortholog of C. elegans tofu-2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA22484 | |||||||
| Corresponding_transcript | PPA22484.1 | ||||||||
| Other_sequence | Dviv_isotig28246 | ||||||||
| JI164039.1 | |||||||||
| PPC13226_1 | |||||||||
| JO470638.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_51118 | |||||||
| Remark | [190208 pad] The CGC name Ppa-hrpu-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-hrpu-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
