WormBase Tree Display for Gene: WBGene00112308
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| WBGene00112308 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-vps-18 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA22754 | ||||||||
| Molecular_name | PPA22754 | ||||||||
| PPA22754.1 | |||||||||
| PP74503 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000079495 | ||||||||
| GENEPREDICTION_SNAP300000079497 | |||||||||
| UMA-S421-0.34 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-vps-18 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00112310 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-18 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-18 | ||||
| Acquires_merge | WBGene00112310 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.66316 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 12.3907 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 4.66316 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 5.68462 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00106758 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Pep3/Vps18/deep orange family and Pep3/Vps18/deep orange. Is an ortholog of C. elegans vps-18. In C. elegans, vps-18 is involved in endosome organization and phagosome-lysosome fusion involved in apoptotic cell clearance. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA22754 | |||||||
| Corresponding_CDS_history | PPA22754:pp270 | ||||||||
| Corresponding_transcript | PPA22754.1 | ||||||||
| Other_sequence (17) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_40531 | |||||||
| GPL14372_Probes_64392 | |||||||||
| GPL14372_Probes_64395 | |||||||||
| GPL14372_Probes_64396 | |||||||||
| Expression_cluster | WBPaper00041606:PP_X.nematophila_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-vps-18 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-vps-18 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
