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WormBase Tree Display for Gene: WBGene00113083

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Name Class

WBGene00113083SMapS_parentSequencePPA_ChrX
IdentityVersion8
NameCGC_namePpa-vha-13From_analysisInferred_from_orthology
Sequence_namePPA23529
Molecular_namePPA23529
PPA23529.1
PP71551
Other_nameGENEPREDICTION_SNAP300000080424
GENEPREDICTION_SNAP300000080426
UMM-S344-4.72Person_evidenceWBPerson606
Ppa-vha-13.2From_analysisInferred_from_orthology
Public_namePpa-vha-13
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
218 Nov 2010 11:54:47WBPerson2970Name_changeCGC_namePpa-vha-13
324 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00113085
424 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00204598
508 May 2019 10:09:27WBPerson1983Name_changeCGC_namePpa-vha-13.2
Other_namePpa-vha-13
601 Oct 2019 10:47:49WBPerson1983Name_changeCGC_namePpa-vha-13
Other_namePpa-vha-13.2
704 Feb 2020 15:43:57WBPerson1983Name_changeCGC_namePpa-vha-13.2
Other_namePpa-vha-13
804 Jun 2020 14:38:21WBPerson1983Name_changeCGC_namePpa-vha-13
Other_namePpa-vha-13.2
Acquires_mergeWBGene00113085
WBGene00204598
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
RNASeq_FPKMWBls:00000329.98154From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010115.7175From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
8.56635From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
9.98154From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
GO_annotation00183964
00183965
00183966
00183967
00183968
00183969
Ortholog (39)
ParalogWBGene00099021Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00108325Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112207Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00272447Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278073Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278338Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281648Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00305099Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; ATP hydrolysis activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in ATP metabolic process and proton transmembrane transport. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is an ortholog of C. elegans vha-13. In C. elegans, vha-13 is involved in lysosomal lumen acidification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA23529
Corresponding_transcriptPPA23529.1
Other_sequence (121)
Experimental_infoMicroarray_resultsGPL14372_Probes_80719
GPL14372_Probes_80720
GPL14372_Probes_80726
GPL14372_Probes_80727
GPL14372_Probes_80728
GPL14372_Probes_80729
GPL14372_Probes_80730
Expression_clusterWBPaper00041207:PP_dauer_down
WBPaper00041606:PP_X.nematophila_regulated
MethodGene