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WormBase Tree Display for Gene: WBGene00113242

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Name Class

WBGene00113242SMapS_parentSequencePPA_ChrI
IdentityVersion3
NameCGC_namePpa-nhr-25Inferred_automaticallyfrom gene merge
Sequence_namePPA23688
Molecular_namePPA23688
PPA23688.1
PP61867
Other_nameGENEPREDICTION_SNAP300000080574
GENEPREDICTION_SNAP300000080575
UMM-S57-8.37Person_evidenceWBPerson606
Public_namePpa-nhr-25
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-nhr-25
324 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00113243
Acquires_mergeWBGene00113243
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000321.99931From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.99931From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
2.24058From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
4.72243From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00184068
00184069
00184070
00184071
00184072
00184073
Ortholog (41)
ParalogWBGene00108005Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110840Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278932Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable nuclear receptor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-25. In C. elegans, nhr-25 is involved in molting cycle and positive regulation of nematode male tail tip morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA23688
Corresponding_transcriptPPA23688.1
Other_sequence (17)
Experimental_infoMicroarray_resultsGPL14372_Probes_17904
GPL14372_Probes_68720
GPL14372_Probes_68721
GPL14372_Probes_68723
Expression_clusterWBPaper00064862:Ppa-sul-2(tu1069)_4M2_Up
WBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Down
MethodGene