WormBase Tree Display for Gene: WBGene00113534
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| WBGene00113534 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-skr-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA23980 | ||||||||
| Molecular_name | PPA23980 | ||||||||
| PPA23980.1 | |||||||||
| PP66117 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000080874 | ||||||||
| GENEPREDICTION_SNAP300000080875 | |||||||||
| UMM-S245-6.39 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-skr-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00113535 | ||||
| 3 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-skr-1 | ||||
| 4 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-skr-1 | ||||
| Acquires_merge | WBGene00113535 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0.710389 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.710389 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 22.6505 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 7.78696 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00184235 | ||||||||
| 00184236 | |||||||||
| 00184237 | |||||||||
| 00184238 | |||||||||
| 00184239 | |||||||||
| 00184240 | |||||||||
| Ortholog (40) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Automated_description | Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport and ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Is an ortholog of C. elegans skr-1. In C. elegans, skr-1 is involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA23980 | |||||||
| Corresponding_transcript | PPA23980.1 | ||||||||
| Other_sequence (134) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_29335 | |||||||
| GPL14372_Probes_29336 | |||||||||
| GPL14372_Probes_29337 | |||||||||
| GPL14372_Probes_29338 | |||||||||
| GPL14372_Probes_29339 | |||||||||
| GPL14372_Probes_85323 | |||||||||
| GPL14372_Probes_85324 | |||||||||
| Remark | [190507 pad] The CGC name Ppa-skr-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
