WormBase Tree Display for Gene: WBGene00113591
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WBGene00113591 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Identity | Version | 6 | ||||
Name | CGC_name | Ppa-pag-3 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA24037 | |||||
Molecular_name | PPA24037 | |||||
PPA24037.1 | ||||||
PP67106 | ||||||
Other_name | GENEPREDICTION_SNAP300000080929 | |||||
UMA-S7-75.45 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-pag-3 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (6) | |||||
Acquires_merge | WBGene00203218 | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | pag | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||
RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
Ortholog (33) | ||||||
Paralog | WBGene00090697 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
WBGene00116968 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2 superfamily; C2H2-type zinc finger; and Zinc finger C2H2-type. Is an ortholog of C. elegans pag-3. In C. elegans, pag-3 is involved in several processes, including negative regulation of secretion by cell; neuroblast fate specification; and regulation of locomotion. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA24037 | ||||
Corresponding_transcript | PPA24037.1 | |||||
Other_sequence (18) | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_13222 | ||||
GPL14372_Probes_13223 | ||||||
GPL14372_Probes_13224 | ||||||
GPL14372_Probes_34332 | ||||||
Remark | [190208 pad] The CGC name Ppa-pag-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[210528 pad] The CGC name Ppa-pag-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |